1U2X Transferase date Jul 20, 2004
title Crystal Structure Of A Hypothetical Adp-Dependent Phosphofru From Pyrococcus Horikoshii Ot3
authors A.H.Y.Wong, Z.Jia, T.Skarina, J.R.Walker, C.Arrowsmith, A.Joachim A.Edwards, A.Savchenko, Midwest Center For Structural Genomic
compound source
Molecule: Adp-Specific Phosphofructokinase
Chain: A, B
Synonym: Adp-Dependent Phosphofructokinase, Adp-Pfk
Ec: 2.7.1.146
Engineered: Yes
 Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 53953
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.174 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.065 99.932 82.581 90.00 110.38 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE, SO4 enzyme Transferase E.C.2.7.1.146 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phosphofructokinase activity...


    • Primary referenceADP-dependent 6-phosphofructokinase from Pyrococcus horikoshii OT3: structure determination and biochemical characterization of PH1645., Currie MA, Merino F, Skarina T, Wong AH, Singer A, Brown G, Savchenko A, Caniuguir A, Guixe V, Yakunin AF, Jia Z, J Biol Chem. 2009 Aug 21;284(34):22664-71. Epub 2009 Jun 24. PMID:19553681
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (1u2x.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (1u2x.pdb2.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 1U2X
  • CSU: Contacts of Structural Units for 1U2X
  • Likely Quarternary Molecular Structure file(s) for 1U2X
  • Structure Factors (980 Kb)
  • Retrieve 1U2X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U2X from S2C, [Save to disk]
  • Re-refined 1u2x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1U2X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U2X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U2X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u2xa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1u2xb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u2x_B] [1u2x_A] [1u2x]
  • SWISS-PROT database: [O59355]
  • Domain organization of [K6PF_PYRHO] by SWISSPFAM
    • Other resources with information on 1U2X
  • Community annotation for 1U2X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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