1U5Y	Cytokine, Hormone Growth Factor	date	Jul 28, 2004
title	Crystal Structure Of Murine April, Ph 8.0
authors	H.J.Wallweber, D.M.Compaan, M.A.Starovasnik, S.G.Hymowitz
compound		source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 1 Chain: A, B, D Fragment: Tnf Domain Of Murine April Synonym: A Proliferation- Inducing Ligand, April Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Tnfsf13, April Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Origami (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-32a (Modified)
symmetry	Space Group: C 1 2 1	R_factor 0.201 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.344 81.166 53.585 90.00 111.79 90.00
method	X-Ray Diffraction	resolution	2.30 Å
related structures	by homologous chain: 1XU1, 1XU2
Gene Ontology	Chain Function Process Component A, D, B
Primary reference	The Crystal Structure of A Proliferation-inducing Ligand, APRIL., Wallweber HJ, Compaan DM, Starovasnik MA, Hymowitz SG, J Mol Biol 2004 Oct 15;343(2):283-90. PMID:15451660

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (1u5y.pdb1.gz) 64 Kb CSU: Contacts of Structural Units for 1U5Y Likely Quarternary Molecular Structure file(s) for 1U5Y Structure Factors (152 Kb) Retrieve 1U5Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1U5Y from S2C, [Save to disk] Re-refined 1u5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1U5Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1U5Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1U5Y, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1u5ya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1u5yb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1u5yd_, region D [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1u5y_D] [1u5y_A] [1u5y_B] [1u5y] SWISS-PROT database: [Q9D777] Domain organization of [TNF13_MOUSE] by SWISSPFAM Domain found in 1U5Y: [TNF ] by SMART

Other resources with information on 1U5Y

Community annotation for 1U5Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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