1U6N Dna date Jul 30, 2004
title Solution Structure Of An Oligodeoxynucleotide Containing A B Derived N1 B-Hydroxyalkyl Adduct On Deoxyinosine In The Hum Codon 61 Sequence
authors T.A.Scholdberg, W.K.Merritt, S.M.Dean, A.Kowalcyzk, T.M.Harris, C.M.Harris, R.S.Lloyd, M.P.Stone
compound source
Molecule: 5'-D(Cpgpgpapcp(2bd)Papgpapapg)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Cptptpcptptpgptpcpcpg)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand 2BD enzyme
Primary referenceStructure of an oligodeoxynucleotide containing a butadiene oxide-derived N1 beta-hydroxyalkyl deoxyinosine adduct in the human N-ras codon 61 sequence., Scholdberg TA, Merritt WK, Dean SM, Kowalcyzk A, Harris CM, Harris TM, Rizzo CJ, Lloyd RS, Stone MP, Biochemistry 2005 Mar 8;44(9):3327-37. PMID:15736943
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (1u6n.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1U6N
  • CSU: Contacts of Structural Units for 1U6N
  • Retrieve 1U6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U6N from S2C, [Save to disk]
    • View 1U6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U6N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U6N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u6n_B] [1u6n_A] [1u6n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1U6N
  • Community annotation for 1U6N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science