1U6Q	Hydrolase	date	Jul 30, 2004
title	Substituted 2-Naphthamadine Inhibitors Of Urokinase
authors	M.Bruncko, W.Mcclellan, M.D.Wendt, D.R.Sauer, A.Geyer, C.R.Dalton, M.K.Kaminski, V.L.Nienaber, T.R.Rockway, V.L.Girand
compound		source
Molecule: Urokinase-Type Plasminogen Activator Chain: A Fragment: Residues 179-423 Synonym: Upa, U-Plasminogen Activator Ec: 3.4.21.73 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plau Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.270 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.160 53.000 82.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.02 Å
ligand	745	enzyme	Hydrolase E.C.3.4.21.73 BRENDA
related structures	by homologous chain: 1F5L, 1SQA
Gene Ontology	Chain Function Process Component A
Primary reference	Naphthamidine urokinase plasminogen activator inhibitors with improved pharmacokinetic properties., Bruncko M, McClellan WJ, Wendt MD, Sauer DR, Geyer A, Dalton CR, Kaminski MA, Weitzberg M, Gong J, Dellaria JF, Mantei R, Zhao X, Nienaber VL, Stewart K, Klinghofer V, Bouska J, Rockway TW, Giranda VL, Bioorg Med Chem Lett. 2005 Jan 3;15(1):93-8. PMID:15582418

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (1u6q.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 1U6Q CSU: Contacts of Structural Units for 1U6Q Likely Quarternary Molecular Structure file(s) for 1U6Q Structure Factors (110 Kb) Retrieve 1U6Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1U6Q from S2C, [Save to disk] Re-refined 1u6q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1U6Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1U6Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1U6Q, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1u6qa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1u6q_A] [1u6q] SWISS-PROT database: [P00749] Domain organization of [UROK_HUMAN] by SWISSPFAM Domain found in 1U6Q: [Tryp_SPc ] by SMART

Other resources with information on 1U6Q

Community annotation for 1U6Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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