1U6Z Hydrolase date Aug 02, 2004
title Structure Of An E. Coli Exopolyphosphatase: Insight Into The Processive Hydrolysis Of Polyphosphate And Its Regulation
authors M.S.Hasson, J.Alvarado, D.A.Sanders
compound source
Molecule: Exopolyphosphatase
Chain: A, B
Synonym: Exopolypase, Metaphosphatase
Ec: 3.6.1.11
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Ppx
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30-A(+)
symmetry Space Group: P 41 21 2
R_factor 0.204 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.144 89.144 350.686 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4 enzyme Hydrolase E.C.3.6.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOrigin of exopolyphosphatase processivity: Fusion of an ASKHA phosphotransferase and a cyclic nucleotide phosphodiesterase homolog., Alvarado J, Ghosh A, Janovitz T, Jauregui A, Hasson MS, Sanders DA, Structure. 2006 Aug;14(8):1263-72. PMID:16905100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (1u6z.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 1U6Z
  • CSU: Contacts of Structural Units for 1U6Z
  • Likely Quarternary Molecular Structure file(s) for 1U6Z
  • Structure Factors (774 Kb)
  • Retrieve 1U6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U6Z from S2C, [Save to disk]
  • Re-refined 1u6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U6Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U6Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U6Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u6z] [1u6z_B] [1u6z_A]
  • SWISS-PROT database: [P0AFL6]
  • Domain organization of [PPX_ECOLI] by SWISSPFAM
  • Other resources with information on 1U6Z
  • Community annotation for 1U6Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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