1UAW Rna Binding Protein date Mar 24, 2003
title Solution Structure Of The N-Terminal Rna-Binding Domain Of M Musashi1
authors Y.Miyanoiri, H.Kobayashi, M.Watanabe, T.Ikeda, T.Nagata, H.Okano, M.Katahira
compound source
Molecule: Mouse-Musashi-1
Chain: A
Fragment: N-Terminal Rna-Binding Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Tissue: Neural Stem
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOrigin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, musashi1, as revealed by comparison of their structures, modes of interaction, surface electrostatic potentials, and backbone dynamics., Miyanoiri Y, Kobayashi H, Imai T, Watanabe M, Nagata T, Uesugi S, Okano H, Katahira M, J Biol Chem. 2003 Oct 17;278(42):41309-15. Epub 2003 Aug 7. PMID:12907678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (1uaw.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1UAW
  • Retrieve 1UAW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UAW from S2C, [Save to disk]
    • View 1UAW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UAW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UAW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uawa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uaw_A] [1uaw]
  • SWISS-PROT database: [Q61474]
  • Domain organization of [MSI1H_MOUSE] by SWISSPFAM
  • Domain found in 1UAW: [RRM ] by SMART
    • Other resources with information on 1UAW
  • Community annotation for 1UAW at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science