1UDH	Hydrolase	date	Oct 30, 1995
title	The Structural Basis Of Specific Base Excision Repair By Ura Glycosylase
authors	L.H.Pearl, R.Savva
compound		source
Molecule: Uracil-Dna Glycosylase Chain: A Ec: 3.2.2.3 Other_details: Encoded By The Ul2 Orf Of Herpes Simplex Vir		Organism_scientific: Herpes Simplex Virus (Type 1 Strain Organism_taxid: 10299 Strain: 17
symmetry	Space Group: P 31	R_factor 0.191 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.140 65.140 49.160 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	SO4, URA	enzyme	Hydrolase E.C.3.2.2.3 BRENDA
related structures	by homologous chain: 1UDG
Gene Ontology	Chain Function Process Component A
Primary reference	The structural basis of specific base-excision repair by uracil-DNA glycosylase., Savva R, McAuley-Hecht K, Brown T, Pearl L, Nature 1995 Feb 9;373(6514):487-93. PMID:7845459

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1udh.pdb1.gz) 39 Kb LPC: Ligand-Protein Contacts for 1UDH CSU: Contacts of Structural Units for 1UDH Likely Quarternary Molecular Structure file(s) for 1UDH Retrieve 1UDH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UDH from S2C, [Save to disk]

View 1UDH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UDH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UDH, from MSDmotif at EBI Genome occurence of 1UDH's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1udh__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1udh] [1udh_A] SWISS-PROT database: [P10186] Domain organization of [UNG_HHV11] by SWISSPFAM Domains found in 1UDH: [UDG] [UreE_C ] by SMART

Other resources with information on 1UDH

Community annotation for 1UDH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---