OCA Atlas for 1UEO

1UEO

Antibiotic

date

May 20, 2003

title

Solution Structure Of The [T8a]-Penaeidin-3

authors

Y.Yang, J.Poncet, J.Garnier, C.Zatylny, E.Bachere, A.Aumelas

compound

source

Molecule: Penaeidin-3a
Chain: A
Synonym: Penaeidin-3
Engineered: Yes
Mutation: Yes

Organism_scientific: Litopenaeus Vannamei
Organism_common: Pacific White Shrimp
Organism_taxid: 6689
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Tgy 48-1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptg4812

method

Solution NMR

note

1UEO is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure of the recombinant penaeidin-3, a shrimp antimicrobial peptide., Yang Y, Poncet J, Garnier J, Zatylny C, Bachere E, Aumelas A, J Biol Chem 2003 Sep 19;278(38):36859-67. Epub 2003 Jul 3. PMID:12842879

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]

Biological Unit Coordinates (1ueo.pdb1.gz) 15 Kb

CSU: Contacts of Structural Units for 1UEO

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1UEO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1UEO from S2C, [Save to disk]

View 1UEO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UEO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1UEO, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1ueoa_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ueo_A] [1ueo]

SWISS-PROT database: [P81058]

Domain organization of [PEN3A_LITVA] by SWISSPFAM

Other resources with information on 1UEO

Community annotation for 1UEO at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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