1UES Oxidoreductase date May 20, 2003
title Crystal Structure Of Porphyromonas Gingivalis Sod
authors F.Yamakura, S.Sugio, B.Y.Hiraoka, T.Yokota, D.Ohmori
compound source
Molecule: Superoxide Dismutase
Chain: A, B, C, D
Synonym: Sod
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Porphyromonas Gingivalis
Organism_taxid: 837
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.680 95.120 98.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1UER
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • superoxide dismutase activit...


    • Primary referencePronounced conversion of the metal-specific activity of superoxide dismutase from Porphyromonas gingivalis by the mutation of a single amino acid (Gly155Thr) located apart from the active site., Yamakura F, Sugio S, Hiraoka BY, Ohmori D, Yokota T, Biochemistry 2003 Sep 16;42(36):10790-9. PMID:12962504
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (1ues.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (1ues.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1UES
  • CSU: Contacts of Structural Units for 1UES
  • Likely Quarternary Molecular Structure file(s) for 1UES
  • Retrieve 1UES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UES from S2C, [Save to disk]
    • View 1UES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UES
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UES, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uesa1, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1uesa2, region A:85-191 [Jmol] [rasmolscript] [script source]
        - Domain d1uesb1, region B:201-284 [Jmol] [rasmolscript] [script source]
        - Domain d1uesb2, region B:285-391 [Jmol] [rasmolscript] [script source]
        - Domain d1uesc1, region C:401-484 [Jmol] [rasmolscript] [script source]
        - Domain d1uesc2, region C:495-581 [Jmol] [rasmolscript] [script source]
        - Domain d1uesd1, region D:601-684 [Jmol] [rasmolscript] [script source]
        - Domain d1uesd2, region D:685-791 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ues_B] [1ues_D] [1ues_A] [1ues_C] [1ues]
  • SWISS-PROT database: [P19665]
  • Domain organization of [SODF_PORGI] by SWISSPFAM
    • Other resources with information on 1UES
  • Community annotation for 1UES at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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