1UFA Structural Genomics, Unknown Function date May 28, 2003
title Crystal Structure Of Tt1467 From Thermus Thermophilus Hb8
authors M.Idaka, T.Terada, K.Murayama, H.Yamaguchi, O.Nureki, R.Ishitani, S.Kuramitsu, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tt1467 Protein
Chain: A
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 42 21 2
R_factor 0.187 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.376 119.376 73.898 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (1ufa.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 1UFA
  • CSU: Contacts of Structural Units for 1UFA
  • Likely Quarternary Molecular Structure file(s) for 1UFA
  • Retrieve 1UFA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UFA from S2C, [Save to disk]
  • View 1UFA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UFA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UFA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ufaa2, region A:1-412 [Jmol] [rasmolscript] [script source]
        - Domain d1ufaa1, region A:413-517 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ufa_A] [1ufa]
  • SWISS-PROT database: [P84162]
  • Domain organization of [P84162_THETH] by SWISSPFAM
  • Other resources with information on 1UFA
  • Community annotation for 1UFA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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