1UG9 Hydrolase date Jun 16, 2003
title Crystal Structure Of Glucodextranase From Arthrobacter Globi
authors M.Mizuno, T.Tonozuka, S.Suzuki, R.Uotsu-Tomita, A.Ohtaki, S.Kamit A.Nishikawa, Y.Sakano
compound source
Molecule: Glucodextranase
Chain: A
Ec: 3.2.1.70
Organism_scientific: Arthrobacter Globiformis
Organism_taxid: 1665
Strain: I42
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
199.860 88.535 80.781 90.00 113.08 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, GOL enzyme Hydrolase E.C.3.2.1.70 BRENDA
related structures by homologous chain: 1ULV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into substrate specificity and function of glucodextranase., Mizuno M, Tonozuka T, Suzuki S, Uotsu-Tomita R, Kamitori S, Nishikawa A, Sakano Y, J Biol Chem 2004 Mar 12;279(11):10575-83. Epub 2003 Dec 1. PMID:14660574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (1ug9.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 1UG9
  • CSU: Contacts of Structural Units for 1UG9
  • Likely Quarternary Molecular Structure file(s) for 1UG9
  • Structure Factors (399 Kb)
  • Retrieve 1UG9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UG9 from S2C, [Save to disk]
  • Re-refined 1ug9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UG9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UG9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UG9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ug9a4, region A:2-273 [Jmol] [rasmolscript] [script source]
        - Domain d1ug9a1, region A:274-686 [Jmol] [rasmolscript] [script source]
        - Domain d1ug9a2, region A:687-775 [Jmol] [rasmolscript] [script source]
        - Domain d1ug9a3, region A:776-1020 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ug9_A] [1ug9]
  • SWISS-PROT database: [Q9LBQ9]
  • Domain organization of [Q9LBQ9_ARTGO] by SWISSPFAM
  • Other resources with information on 1UG9
  • Community annotation for 1UG9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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