1UGK Protein Binding date Jun 16, 2003
title Solution Structure Of The First C2 Domain Of Synaptotagmin I Human Fetal Brain (Kiaa1342)
authors T.Nagashima, F.Hayashi, M.Shirouzu, T.Terada, T.Kigawa, M.Inoue, T M.Aoki, E.Seki, T.Matsuda, H.Hirota, M.Yoshida, A.Tanaka, T.Osana Y.Matsuo, O.Ohara, T.Nagase, R.Kikuno, M.Nakayama, S.Yokoyama, Ri Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Synaptotagmin Iv
Chain: A
Fragment: C2 Domain
Synonym: Kiaa1342
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Fj00418
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P020924-36
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (705 Kb) [Save to disk]
  • Biological Unit Coordinates (1ugk.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1UGK
  • Original NMR restraints for 1UGK from PDB
  • Retrieve 1UGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UGK from S2C, [Save to disk]
    • View 1UGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UGK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UGK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ugka_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ugk_A] [1ugk]
  • SWISS-PROT database: [Q9H2B2]
  • Domain organization of [SYT4_HUMAN] by SWISSPFAM
  • Domain found in 1UGK: [C2 ] by SMART
    • Other resources with information on 1UGK
  • Community annotation for 1UGK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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