1UGL Plant Protein date Jun 16, 2003
title Solution Structure Of S8-Sp11
authors M.Mishima, S.Takayama, K.Sasaki, J.G.Jee, C.Kojima, A.Isogai, M.Sh Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: S-Locus Pollen Protein
Chain: A
Fragment: Residues 1-50
Synonym: Sp8-Sp11
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Brassica R
methodSolution NMR
note 1UGL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the male determinant factor for Brassica self-incompatibility., Mishima M, Takayama S, Sasaki K, Jee JG, Kojima C, Isogai A, Shirakawa M, J Biol Chem 2003 Sep 19;278(38):36389-95. Epub 2003 Jun 30. PMID:12835321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]
  • Biological Unit Coordinates (1ugl.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1UGL
  • Original NMR restraints for 1UGL from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1UGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UGL from S2C, [Save to disk]
  • View 1UGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UGL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UGL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ugla_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ugl] [1ugl_A]
  • SWISS-PROT database: [Q9SE17]
  • Domain organization of [Q9SE17_BRACM] by SWISSPFAM
  • Other resources with information on 1UGL
  • Community annotation for 1UGL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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