1UGM Structural Protein date Jun 16, 2003
title Crystal Structure Of Lc3
authors K.Sugawara, N.N.Suzuki, Y.Fujioka, N.Mizushima, Y.Ohsumi, F.Inaga
compound source
Molecule: Microtubule-Associated Proteins 1a1b Light Chain
Chain: A
Fragment: Residues -4-120
Synonym: Lc3-I
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p
symmetry Space Group: P 43
R_factor 0.215 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.780 60.780 35.395 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
related structures by homologous chain: 1V49
Primary referenceThe crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8., Sugawara K, Suzuki NN, Fujioka Y, Mizushima N, Ohsumi Y, Inagaki F, Genes Cells 2004 Jul;9(7):611-8. PMID:15265004
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1ugm.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1UGM
  • Likely Quarternary Molecular Structure file(s) for 1UGM
  • Structure Factors (66 Kb)
  • Retrieve 1UGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UGM from S2C, [Save to disk]
  • Re-refined 1ugm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UGM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UGM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ugma_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ugm] [1ugm_A]
  • SWISS-PROT database: [Q62625]
  • Domain organization of [MLP3B_RAT] by SWISSPFAM
    • Other resources with information on 1UGM
  • Community annotation for 1UGM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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