1UH6 Structural Genomics, Unknown Function date Jun 25, 2003
title Solution Structure Of The Murine Ubiquitin-Like 5 Protein Fr Cdna 0610031k06
authors F.Hayashi, M.Shirouzu, T.Terada, T.Kigawa, M.Inoue, T.Yabuki, M.Ao E.Seki, T.Matsuda, H.Hirota, M.Yoshida, A.Tanaka, T.Osanai, T.Ara P.Carninci, J.Kawai, Y.Hayashizaki, S.Yokoyama, Riken Structura Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ubiquitin-Like 5
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 0610031k06
Expression_system_vector_type: Plasmid
Expression_system_plasmid: 011010-5
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
related structures by homologous chain: 1P0R, 1R3B, 1V9J
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (512 Kb) [Save to disk]
  • Biological Unit Coordinates (1uh6.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1UH6
  • Retrieve 1UH6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UH6 from S2C, [Save to disk]
    • View 1UH6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UH6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UH6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uh6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uh6] [1uh6_A]
  • SWISS-PROT database: [Q9EPV8]
  • Domain organization of [UBL5_MOUSE] by SWISSPFAM
    • Other resources with information on 1UH6
  • Community annotation for 1UH6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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