1UI0	Hydrolase	date	Jul 14, 2003
title	Crystal Structure Of Uracil-Dna Glycosylase From Thermus The Hb8
authors	J.Hoseki, A.Okamoto, R.Masui, T.Shibata, Y.Inoue, S.Yokoyama, S.Ku Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Uracil-Dna Glycosylase Chain: A Ec: 3.2.2.- Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Gene: Tthung Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 21	R_factor 0.183 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.429 59.512 80.971 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	SF4, SO4, URA	enzyme	Hydrolase E.C.3.2.2 BRENDA
note	1UI0 is a representative structure
related structures	by homologous chain: 1UI1
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8., Hoseki J, Okamoto A, Masui R, Shibata T, Inoue Y, Yokoyama S, Kuramitsu S, J Mol Biol 2003 Oct 24;333(3):515-26. PMID:14556741

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (1ui0.pdb1.gz) 35 Kb LPC: Ligand-Protein Contacts for 1UI0 CSU: Contacts of Structural Units for 1UI0 Likely Quarternary Molecular Structure file(s) for 1UI0 Structure Factors (227 Kb) Retrieve 1UI0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UI0 from S2C, [Save to disk] Re-refined 1ui0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UI0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UI0

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1UI0 from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UI0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ui0a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ui0_A] [1ui0] SWISS-PROT database: [Q7WYV4] Domain organization of [Q7WYV4_THETH] by SWISSPFAM Domains found in 1UI0: [UDG] [UreE_C ] by SMART

Other resources with information on 1UI0

Community annotation for 1UI0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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