1ULJ	Oxidoreductase	date	Sep 12, 2003
title	Biphenyl Dioxygenase (Bpha1a2) In Complex With The Substrate
authors	Y.Furusawa, V.Nagarajan, E.Masai, M.Tanokura, M.Fukuda, T.Senda
compound		source
Molecule: Biphenyl Dioxygenase Large Subunit Chain: A, C, E Ec: 1.14.12.18 Engineered: Yes		Organism_scientific: Rhodococcus Sp. Organism_taxid: 101510 Strain: Rha1 Expression_system: Rhodococcus Erythropolis Expression_system_taxid: 1833 Expression_system_strain: Iam1399
Molecule: Biphenyl Dioxygenase Small Subunit Chain: B, D, F Ec: 1.14.12.18 Engineered: Yes		Organism_scientific: Rhodococcus Sp. Organism_taxid: 101510 Strain: Rha1 Expression_system: Rhodococcus Erythropolis Expression_system_taxid: 1833 Expression_system_strain: Iam1399
symmetry	Space Group: P 43 21 2	R_factor 0.184 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.834 137.834 237.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	BNL, FE2, FES	enzyme	Oxidoreductase E.C.1.14.12.18 BRENDA
related structures	by homologous chain: 1ULI, 1WQL
Gene Ontology	Chain Function Process Component A, C, E F, D, B
Primary reference	Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1., Furusawa Y, Nagarajan V, Tanokura M, Masai E, Fukuda M, Senda T, J Mol Biol 2004 Sep 17;342(3):1041-52. PMID:15342255

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk] Biological Unit Coordinates (1ulj.pdb1.gz) 293 Kb LPC: Ligand-Protein Contacts for 1ULJ CSU: Contacts of Structural Units for 1ULJ Likely Quarternary Molecular Structure file(s) for 1ULJ Structure Factors (574 Kb) Retrieve 1ULJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ULJ from S2C, [Save to disk] Re-refined 1ulj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ULJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ULJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ULJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ulja1, region A:17-170 [Jmol] [rasmolscript] [script source]     - Domain d1ulja2, region A:171-451 [Jmol] [rasmolscript] [script source]     - Domain d1uljb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1uljc1, region C:17-170 [Jmol] [rasmolscript] [script source]     - Domain d1uljc2, region C:171-451 [Jmol] [rasmolscript] [script source]     - Domain d1uljd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1ulje1, region E:17-170 [Jmol] [rasmolscript] [script source]     - Domain d1ulje2, region E:171-451 [Jmol] [rasmolscript] [script source]     - Domain d1uljf_, region F [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ulj_F] [1ulj] [1ulj_E] [1ulj_A] [1ulj_D] [1ulj_C] [1ulj_B] SWISS-PROT database: [Q53122] [Q53123] Domain organization of [Q53122_RHOSR] [Q53123_RHOSR] by SWISSPFAM

Other resources with information on 1ULJ

Community annotation for 1ULJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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