1UMA Hydrolase Hydrolase Inhibitor date Mar 26, 1996
title Alpha-Thrombin (Hirugen) Complexed With Na-(N,N-Dimethylcarb Alpha-Azalysine
authors M.Nardini, A.Pesce, M.Rizzi, E.Casale, R.Ferraccioli, G.Balliano, P.Ascenzi, M.Bolognesi
compound source
Molecule: Alpha-Thrombin
Chain: L
Ec: 3.4.21.5
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Plasma

Molecule: Alpha-Thrombin
Chain: H
Ec: 3.4.21.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Plasma

Molecule: Hirudin I
Chain: I

Organism_scientific: Hirudo Medicinalis
Organism_common: Medicinal Leech
Organism_taxid: 6421
Tissue: Plasma
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.150 71.900 72.300 90.00 100.49 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand IN2, NAG, TYS enzyme Hydrolase E.C.3.4.21.5 BRENDA
related structures by homologous chain: 1C1V, 1HAG, 1MU6
Gene
Ontology
ChainFunctionProcessComponent
H


L


Primary referenceHuman alpha-thrombin inhibition by the active site titrant N alpha-(N,N-dimethylcarbamoyl)-alpha-azalysine p-nitrophenyl ester: a comparative kinetic and X-ray crystallographic study., Nardini M, Pesce A, Rizzi M, Casale E, Ferraccioli R, Balliano G, Milla P, Ascenzi P, Bolognesi M, J Mol Biol 1996 May 24;258(5):851-9. PMID:8637015
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1uma.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1UMA
  • CSU: Contacts of Structural Units for 1UMA
  • Likely Quarternary Molecular Structure file(s) for 1UMA
  • Structure Factors (177 Kb)
  • Retrieve 1UMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UMA from S2C, [Save to disk]
  • Re-refined 1uma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UMA, from MSDmotif at EBI
  • Genome occurence of 1UMA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uma.1, region L:,H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uma_I] [1uma] [1uma_H] [1uma_L]
  • SWISS-PROT database: [P01050] [P00734]
  • Domain organization of [HIRV1_HIRME] [THRB_HUMAN] by SWISSPFAM
  • Domain found in 1UMA: [Tryp_SPc ] by SMART
  • Other resources with information on 1UMA
  • Community annotation for 1UMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1UMA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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