1UPV	Receptor	date	Oct 13, 2003
title	Crystal Structure Of The Human Liver X Receptor Beta Ligand Domain In Complex With A Synthetic Agonist
authors	S.Hoerer, A.Schmid, A.Heckel, R.M.Budzinski, H.Nar
compound		source
Molecule: Oxysterols Receptor Lxr-Beta Chain: A Fragment: Ligand Binding Domain, Residues 209-461 Synonym: Liver X Receptor Beta, Nuclear Orphan, Receptor Lx Ubiquitously-Expressed Nuclear Receptor, Nuclear Receptor N Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_plasmid: Pet28a(+)
symmetry	Space Group: C 1 2 1	R_factor 0.215 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.800 43.200 51.800 90.00 105.80 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	444 BindingDB	enzyme
related structures	by homologous chain: 1PQ9
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the human liver X receptor beta ligand-binding domain in complex with a synthetic agonist., Hoerer S, Schmid A, Heckel A, Budzinski RM, Nar H, J Mol Biol. 2003 Dec 12;334(5):853-61. PMID:14643652

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (1upv.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 1UPV CSU: Contacts of Structural Units for 1UPV Likely Quarternary Molecular Structure file(s) for 1UPV Retrieve 1UPV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UPV from S2C, [Save to disk]

View 1UPV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UPV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UPV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1upva_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1upv_A] [1upv] SWISS-PROT database: [P55055] Domain organization of [NR1H2_HUMAN] by SWISSPFAM Domain found in 1UPV: [HOLI ] by SMART

Other resources with information on 1UPV

Community annotation for 1UPV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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