1UPX	The crystal structure of the Hybrid Cluster Protein from Desulfovibrio desulfuricans containing molecules in the oxidized and reduced states.	date
authors	Aragao, D., Macedo, S., Mitchell, E.P., Lindley, P.F.
compound		source
symmetry		R_factor R_Free 0.1530
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.25
ligand	FSO, MES, SF3, SF4	enzyme
related structures	by homologous chain: 1GNT, 1OA0
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the hybrid cluster protein (HCP) from Desulfovibrio desulfuricans ATCC 27774 containing molecules in the oxidized and reduced states., Macedo S, Aragao D, Mitchell EP, Lindley P, Acta Crystallogr D Biol Crystallogr 2003 Dec;59(Pt 12):2065-71. PMID:14646063

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk] Biological Unit Coordinates (1upx.pdb1.gz) 100 Kb Biological Unit Coordinates (1upx.pdb2.gz) 101 Kb LPC: Ligand-Protein Contacts for 1UPX CSU: Contacts of Structural Units for 1UPX Likely Quarternary Molecular Structure file(s) for 1UPX Structure Factors (3721 Kb) Retrieve 1UPX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UPX from S2C, [Save to disk] Re-refined 1upx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UPX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UPX

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1UPX 1UPXA 1UPXB from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UPX, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1upxa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1upxb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1upx] [1upx_B] [1upx_A] SWISS-PROT database: [Q01770] Domain organization of [HCP_DESDA] by SWISSPFAM

Other resources with information on 1UPX

Community annotation for 1UPX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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