1URK Plasminogen Activation date Jan 10, 1994
title Solution Structure Of The Amino Terminal Fragment Of Urokina Plasminogen Activator
authors A.P.Hansen, A.M.Petros, R.P.Meadows, D.G.Nettesheim, A.P.Mazar, E.T.Olejniczak, R.X.Xu, T.M.Pederson, J.Henkin, S.W.Fesik
compound source
Molecule: Plasminogen Activator
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand FUC enzyme
related structures by homologous chain: 1KDU
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the amino-terminal fragment of urokinase-type plasminogen activator., Hansen AP, Petros AM, Meadows RP, Nettesheim DG, Mazar AP, Olejniczak ET, Xu RX, Pederson TM, Henkin J, Fesik SW, Biochemistry 1994 Apr 26;33(16):4847-64. PMID:8161544
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]
  • Biological Unit Coordinates (1urk.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1URK
  • CSU: Contacts of Structural Units for 1URK
  • Retrieve 1URK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1URK from S2C, [Save to disk]
    • View 1URK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1URK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1URK, from MSDmotif at EBI
  • Genome occurence of 1URK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1urk_2, region 50-135 [Jmol] [rasmolscript] [script source]
        - Domain d1urk_1, region 6-49 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1urk_A] [1urk]
  • SWISS-PROT database: [P00749]
  • Domain organization of [UROK_HUMAN] by SWISSPFAM
  • Domain found in 1URK: [KR ] by SMART
    • Other resources with information on 1URK
  • Community annotation for 1URK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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