1URZ	Virus Viral Protein	date	Nov 16, 2003
title	Low Ph Induced, Membrane Fusion Conformation Of The Envelope Of Tick-Borne Encephalitis Virus
authors	S.Bressanelli, F.A.Rey
compound		source
Molecule: Envelope Protein Chain: A, B, C, D, E, F		Organism_scientific: Tick-Borne Encephalitis Virus Organism_taxid: 11088 Strain: Neudoerfl
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.500 142.900 173.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
related structures	by homologous chain: 1NA4, 1SVB
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structure of a flavivirus envelope glycoprotein in its low-pH-induced membrane fusion conformation., Bressanelli S, Stiasny K, Allison SL, Stura EA, Duquerroy S, Lescar J, Heinz FX, Rey FA, EMBO J. 2004 Feb 25;23(4):728-38. Epub 2004 Feb 12. PMID:14963486

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk] Biological Unit Coordinates (1urz.pdb1.gz) 184 Kb Biological Unit Coordinates (1urz.pdb2.gz) 181 Kb CSU: Contacts of Structural Units for 1URZ Likely Quarternary Molecular Structure file(s) for 1URZ Structure Factors (626 Kb) Retrieve 1URZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1URZ from S2C, [Save to disk] Re-refined 1urz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1URZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1URZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1URZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1urza2, region A:2-302 [Jmol] [rasmolscript] [script source]     - Domain d1urza1, region A:303-401 [Jmol] [rasmolscript] [script source]     - Domain d1urzb2, region B:2-302 [Jmol] [rasmolscript] [script source]     - Domain d1urzb1, region B:303-401 [Jmol] [rasmolscript] [script source]     - Domain d1urzc2, region C:2-302 [Jmol] [rasmolscript] [script source]     - Domain d1urzc1, region C:303-401 [Jmol] [rasmolscript] [script source]     - Domain d1urzd2, region D:2-302 [Jmol] [rasmolscript] [script source]     - Domain d1urzd1, region D:303-401 [Jmol] [rasmolscript] [script source]     - Domain d1urze2, region E:2-302 [Jmol] [rasmolscript] [script source]     - Domain d1urze1, region E:303-401 [Jmol] [rasmolscript] [script source]     - Domain d1urzf2, region F:2-302 [Jmol] [rasmolscript] [script source]     - Domain d1urzf1, region F:303-401 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1urz_E] [1urz] [1urz_F] [1urz_D] [1urz_C] [1urz_B] [1urz_A] SWISS-PROT database: [P14336] [Q80E47] Belongs to the viral pore-forming membrane fusion protein-3 (vmfp3) family according to TCDB. Domain organization of [POLG_TBEVW] [Q80E47_9FLAV] by SWISSPFAM

Other resources with information on 1URZ

Community annotation for 1URZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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