1USP Oxidoreductase date Nov 27, 2003
title Organic Hydroperoxide Resistance Protein From Deinococcus Radiodurans
authors C.Meunier-Jamin, U.Kapp, G.Leonard, S.Mcsweeney
compound source
Molecule: Organic Hydroperoxide Resistance Protein
Chain: A
Engineered: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 243230
Strain: R1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Gateway Pdest17

Molecule: Organic Hydroperoxide Resistance Protein
Chain: B
Engineered: Yes

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 243230
Strain: R1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Gateway Pdest17
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.408 56.600 49.458 90.00 90.27 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand GOL, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of the organic hydroperoxide resistance protein from Deinococcus radiodurans. Do conformational changes facilitate recycling of the redox disulfide?, Meunier-Jamin C, Kapp U, Leonard GA, McSweeney S, J Biol Chem 2004 Jun 11;279(24):25830-7. Epub 2004 Mar 30. PMID:15054099
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1usp.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1USP
  • CSU: Contacts of Structural Units for 1USP
  • Likely Quarternary Molecular Structure file(s) for 1USP
  • Structure Factors (127 Kb)
  • Retrieve 1USP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1USP from S2C, [Save to disk]
  • Re-refined 1usp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1USP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1USP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1USP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uspa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uspb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1usp] [1usp_A] [1usp_B]
  • SWISS-PROT database: [Q9RTA8]
  • Domain organization of [Q9RTA8_DEIRA] by SWISSPFAM
  • Other resources with information on 1USP
  • Community annotation for 1USP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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