1UT3 Antibiotic date Dec 02, 2003
title Solution Structure Of Spheniscin-2, A Beta-Defensin From Penguin Stomach Preserving Food
authors C.Landon, H.Labbe, C.Thouzeau, P.Bulet, F.Vovelle
compound source
Molecule: Spheniscin-2
Chain: A
Synonym: Sphe-2, Pbd-2
Other_details: Antimicrobial Peptide Belonging To The Defensin Family.
 Synthetic: Yes
Organism_scientific: Aptenodytes Patagonicus
Organism_common: King Penguin
Organism_taxid: 9234
Tissue: Stomachal Content
Other_details: The Studies On The King Penguins Were Carried Out On Possession Island, Crozet Archipelago.
methodSolution NMR
note 1UT3 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of spheniscin, a beta-defensin from the penguin stomach., Landon C, Thouzeau C, Labbe H, Bulet P, Vovelle F, J Biol Chem. 2004 Jul 16;279(29):30433-9. Epub 2004 Apr 30. PMID:15123713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1UT3
  • Retrieve 1UT3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UT3 from S2C, [Save to disk]
    • View 1UT3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UT3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UT3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ut3a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ut3_A] [1ut3]
  • SWISS-PROT database: [P83430]
  • Domain organization of [SPHE2_APTPA] by SWISSPFAM
    • Other resources with information on 1UT3
  • Community annotation for 1UT3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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