1UU7	Transferase	date	Dec 16, 2003
title	Structure Of Human Pdk1 Kinase Domain In Complex With Bim-2
authors	D.Komander, G.S.Kular, A.W.Schuttelkopf, M.Deak, K.R.Prakash, J.B M.Elliot, M.Garrido-Franco, A.P.Kozikowski, D.R.Alessi, D.M.F.V
compound		source
Molecule: 3-Phosphoinositide Dependent Protein Kinase-1 Chain: A Fragment: Kinase Domain, Residues 51-360 Synonym: Hpdk1 Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac1 Other_details: Baculovirus Infected
symmetry	Space Group: P 32 2 1	R_factor 0.234 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.947 121.947 48.071 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BI2, GOL, SEP, SO4 BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1UU3, 1UU9
Gene Ontology	Chain Function Process Component A
Primary reference	Interactions of LY333531 and other bisindolyl maleimide inhibitors with PDK1., Komander D, Kular GS, Schuttelkopf AW, Deak M, Prakash KR, Bain J, Elliott M, Garrido-Franco M, Kozikowski AP, Alessi DR, van Aalten DM, Structure (Camb) 2004 Feb;12(2):215-26. PMID:14962382

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (1uu7.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 1UU7 CSU: Contacts of Structural Units for 1UU7 Likely Quarternary Molecular Structure file(s) for 1UU7 Structure Factors (239 Kb) Retrieve 1UU7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UU7 from S2C, [Save to disk] Re-refined 1uu7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UU7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UU7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UU7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uu7a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uu7_A] [1uu7] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 1UU7: [S_TKc ] by SMART

Other resources with information on 1UU7

Community annotation for 1UU7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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