1UWV	Transferase	date	Feb 11, 2004
title	Crystal Structure Of Ruma, The Iron-Sulfur Cluster Containing E. Coli 23s Ribosomal Rna 5-Methyluridine Methyltransferase
authors	T.T.Lee, S.Agarwalla, R.M.Stroud
compound		source
Molecule: 23s Rrna (Uracil-5-)-Methyltransferase Ruma Chain: A Synonym: 23s Rrna(M-5-U1939)-Methyltransferase Ec: 2.1.1.- Engineered: Yes Other_details: Iron-Sulfur Cluster Linked By Cys81, Cys87, Cys90, And Cys162		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K12 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.186 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.938 99.448 58.519 90.00 100.57 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	CL, MSE, NI, PO4, SF4	enzyme	Transferase E.C.2.1.1 BRENDA
related structures	by homologous chain: 2BH2
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of RumA, an iron-sulfur cluster containing E. coli ribosomal RNA 5-methyluridine methyltransferase., Lee TT, Agarwalla S, Stroud RM, Structure (Camb) 2004 Mar;12(3):397-407. PMID:15016356

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (1uwv.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 1UWV CSU: Contacts of Structural Units for 1UWV Likely Quarternary Molecular Structure file(s) for 1UWV Retrieve 1UWV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UWV from S2C, [Save to disk]

View 1UWV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UWV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UWV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uwva1, region A:15-74 [Jmol] [rasmolscript] [script source]     - Domain d1uwva2, region A:75-432 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uwv] [1uwv_A] SWISS-PROT database: [P55135] Domain organization of [RUMA_ECOLI] by SWISSPFAM

Other resources with information on 1UWV

Community annotation for 1UWV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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