1UXL Oxidoreductase date Feb 25, 2004
title I113t Mutant Of Human Sod1
authors M.A.Hough, J.G.Grossmann, S.V.Antonyuk, R.W.Strange, P.A.Doucett J.A.Rodriguez, L.J.Whitson, P.J.Hart, L.J.Hayward, J.S.Valentin S.S.Hasnain
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, B, C, D, E, F, G, H, I, J
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
Expression_system_strain: Eg118
Expression_system_variant: Yep351
symmetry Space Group: C 2 2 21
R_factor 0.170 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.042 203.546 144.021 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CU, SO4, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1CBJ, 1XSO
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

    • Primary referenceDimer destabilization in superoxide dismutase may result in disease-causing properties: structures of motor neuron disease mutants., Hough MA, Grossmann JG, Antonyuk SV, Strange RW, Doucette PA, Rodriguez JA, Whitson LJ, Hart PJ, Hayward LJ, Valentine JS, Hasnain SS, Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):5976-81. Epub 2004 Mar 31. PMID:15056757
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk]
  • Biological Unit Coordinates (1uxl.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (1uxl.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (1uxl.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (1uxl.pdb4.gz) 58 Kb
  • Biological Unit Coordinates (1uxl.pdb5.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1UXL
  • CSU: Contacts of Structural Units for 1UXL
  • Likely Quarternary Molecular Structure file(s) for 1UXL
  • Structure Factors (4570 Kb)
  • Retrieve 1UXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UXL from S2C, [Save to disk]
  • Re-refined 1uxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UXL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UXL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uxla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uxlb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1uxlc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1uxld_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1uxle_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1uxlf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1uxlg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1uxlh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1uxli_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1uxlj_, region J [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uxl_I] [1uxl_B] [1uxl_J] [1uxl_D] [1uxl_A] [1uxl] [1uxl_G] [1uxl_H] [1uxl_E] [1uxl_C] [1uxl_F]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
    • Other resources with information on 1UXL
  • Community annotation for 1UXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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