1UYP Hydrolase date Mar 02, 2004
title The Three-Dimensional Structure Of Beta-Fructosidase (Invert Thermotoga Maritima
authors F.Alberto, C.Bignon, G.Sulzenbacher, B.Henrissat, M.Czjzek
compound source
Molecule: Beta-Fructosidase
Chain: A, B, C, D, E, F
Ec: 3.2.1.26
Engineered: Yes
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 243274
Strain: Msb8
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pdest17
Other_details: German Collection Of Microorganisms (Dsm 310
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.480 114.670 130.030 90.00 98.96 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CIT, GOL, NA, SO4 enzyme Hydrolase E.C.3.2.1.26 BRENDA
note 1UYP supersedes 1UTW
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceThe three-dimensional structure of invertase (beta-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases., Alberto F, Bignon C, Sulzenbacher G, Henrissat B, Czjzek M, J Biol Chem. 2004 Apr 30;279(18):18903-10. Epub 2004 Feb 18. PMID:14973124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (468 Kb) [Save to disk]
  • Biological Unit Coordinates (1uyp.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (1uyp.pdb2.gz) 83 Kb
  • Biological Unit Coordinates (1uyp.pdb3.gz) 82 Kb
  • Biological Unit Coordinates (1uyp.pdb4.gz) 82 Kb
  • Biological Unit Coordinates (1uyp.pdb5.gz) 82 Kb
  • Biological Unit Coordinates (1uyp.pdb6.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1UYP
  • CSU: Contacts of Structural Units for 1UYP
  • Likely Quarternary Molecular Structure file(s) for 1UYP
  • Structure Factors (2959 Kb)
  • Retrieve 1UYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UYP from S2C, [Save to disk]
  • Re-refined 1uyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UYP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UYP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uypa2, region A:1-294 [Jmol] [rasmolscript] [script source]
        - Domain d1uypa1, region A:295-432 [Jmol] [rasmolscript] [script source]
        - Domain d1uypb2, region B:1-294 [Jmol] [rasmolscript] [script source]
        - Domain d1uypb1, region B:295-432 [Jmol] [rasmolscript] [script source]
        - Domain d1uypc2, region C:1-294 [Jmol] [rasmolscript] [script source]
        - Domain d1uypc1, region C:295-432 [Jmol] [rasmolscript] [script source]
        - Domain d1uypd2, region D:1-294 [Jmol] [rasmolscript] [script source]
        - Domain d1uypd1, region D:295-432 [Jmol] [rasmolscript] [script source]
        - Domain d1uype2, region E:1-294 [Jmol] [rasmolscript] [script source]
        - Domain d1uype1, region E:295-432 [Jmol] [rasmolscript] [script source]
        - Domain d1uypf2, region F:1-294 [Jmol] [rasmolscript] [script source]
        - Domain d1uypf1, region F:295-432 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uyp_C] [1uyp] [1uyp_B] [1uyp_A] [1uyp_D] [1uyp_E] [1uyp_F]
  • SWISS-PROT database: [O33833]
  • Domain organization of [BFRA_THEMA] by SWISSPFAM
  • Domain found in 1UYP: [Glyco_32 ] by SMART
    • Other resources with information on 1UYP
  • Community annotation for 1UYP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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