1UZG Viral Protein date Mar 11, 2004
title Crystal Structure Of The Dengue Type 3 Virus Envelope Protei
authors Y.Modis, S.C.Harrison
compound source
Molecule: Major Envelope Protein E
Chain: A, B
Fragment: Soluble Ectodomain, Residues 281-672
Synonym: Dengue Virus Type 2 Major Envelope Protein E
Engineered: Yes
Organism_scientific: Dengue Virus Type 3
Organism_taxid: 11069
Cell_line: Drosophila Schneider 2
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider 2
Expression_system_plasmid: Pmtt
symmetry Space Group: P 21 21 21
R_factor 0.284 R_Free 0.324
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.855 68.631 270.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand BMA, FUL, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceVariable surface epitopes in the crystal structure of dengue virus type 3 envelope glycoprotein., Modis Y, Ogata S, Clements D, Harrison SC, J Virol. 2005 Jan;79(2):1223-31. PMID:15613349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (1uzg.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 1UZG
  • CSU: Contacts of Structural Units for 1UZG
  • Likely Quarternary Molecular Structure file(s) for 1UZG
  • Structure Factors (150 Kb)
  • Retrieve 1UZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UZG from S2C, [Save to disk]
  • Re-refined 1uzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UZG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UZG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uzg_B] [1uzg] [1uzg_A]
  • SWISS-PROT database: [P27915]
  • Domain organization of [POLG_DEN3P] by SWISSPFAM
  • Other resources with information on 1UZG
  • Community annotation for 1UZG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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