1V08	Hydrolase	date	Mar 25, 2004
title	Crystal Structure Of The Zea Maze Beta-Glucosidase-1 In Comp Gluco-Tetrazole
authors	J.Moriniere, L.Verdoucq, D.R.Bevan, A.Esen, B.Henrissat, M.Czjzek
compound		source
Molecule: Beta-Glucosidase Chain: A, B Synonym: Chloroplast Precursor, Gentiobiase, Cellobiase, Be Glucoside Glucohydrolase; Ec: 3.2.1.21 Engineered: Yes Mutation: Yes		Organism_scientific: Zea Mays Organism_taxid: 4577 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.173 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.180 104.800 119.340 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	NTZ	enzyme	Hydrolase E.C.3.2.1.21 BRENDA
related structures	by homologous chain: 1H49, 1V02
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural determinants of substrate specificity in family 1 beta-glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta-glucosidase with strict specificity, in complex with its natural substrate., Verdoucq L, Moriniere J, Bevan DR, Esen A, Vasella A, Henrissat B, Czjze M, J Biol Chem. 2004 Jul 23;279(30):31796-803. Epub 2004 May 17. PMID:15148317

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (1v08.pdb1.gz) 173 Kb LPC: Ligand-Protein Contacts for 1V08 CSU: Contacts of Structural Units for 1V08 Likely Quarternary Molecular Structure file(s) for 1V08 Structure Factors (1333 Kb) Retrieve 1V08 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V08 from S2C, [Save to disk] Re-refined 1v08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V08 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V08

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V08, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v08a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1v08b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v08_A] [1v08_B] [1v08] SWISS-PROT database: [P49235] Domain organization of [BGLC_MAIZE] by SWISSPFAM

Other resources with information on 1V08

Community annotation for 1V08 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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