1V0E Endosialidase of Bacteriophage K1F date
authors Stummeyer, K., Dickmanns, A., Muehlenhoff, M., Gerady-Schahn, R., Ficner, R.
compound source
symmetry
R_factor
R_Free 0.20228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand PO4 enzyme
related structures by homologous chain: 1V0F
Primary referenceCrystal structure of the polysialic acid-degrading endosialidase of bacteriophage K1F., Stummeyer K, Dickmanns A, Muhlenhoff M, Gerardy-Schahn R, Ficner R, Nat Struct Mol Biol. 2005 Jan;12(1):90-6. Epub 2004 Dec 19. PMID:15608653
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (688 Kb) [Save to disk]
  • Biological Unit Coordinates (1v0e.pdb1.gz) 347 Kb
  • Biological Unit Coordinates (1v0e.pdb2.gz) 346 Kb
  • LPC: Ligand-Protein Contacts for 1V0E
  • CSU: Contacts of Structural Units for 1V0E
  • Likely Quarternary Molecular Structure file(s) for 1V0E
  • Structure Factors (2742 Kb)
  • Retrieve 1V0E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V0E from S2C, [Save to disk]
  • Re-refined 1v0e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V0E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V0E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V0E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v0ea1, region A:245-760 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ea2, region A:761-910 [Jmol] [rasmolscript] [script source]
        - Domain d1v0eb1, region B:245-760 [Jmol] [rasmolscript] [script source]
        - Domain d1v0eb2, region B:761-910 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ec1, region C:245-760 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ec2, region C:761-910 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ed1, region D:245-760 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ed2, region D:761-910 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ee1, region E:245-760 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ee2, region E:761-910 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ef1, region F:245-760 [Jmol] [rasmolscript] [script source]
        - Domain d1v0ef2, region F:761-910 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v0e_B] [1v0e_E] [1v0e_A] [1v0e_D] [1v0e] [1v0e_F] [1v0e_C]
  • SWISS-PROT database: [Q04830] [Q858B1]
  • Domain organization of [ENAN_BPK1F] [Q858B1_BPK1F] by SWISSPFAM
  • Other resources with information on 1V0E
  • Community annotation for 1V0E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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