1V0N Hydrolase date Mar 31, 2004
title Xylanase Xyn10a From Streptomyces Lividans In Complex With X Isofagomine At Ph 7.5
authors T.M.Gloster, S.J.Williams, S.Roberts, C.A.Tarling, J.Wicki, S.G.W G.J.Davies
compound source
Molecule: Endo-1,4-Beta-Xylanase A
Chain: A
Fragment: Catalytic Module, Residues 42-354
Synonym: Xylanase A, 1,4-Beta-D-Xylan Xylanohydrolase A
Ec: 3.2.1.8
Engineered: Yes
Organism_scientific: Streptomyces Lividans
Organism_taxid: 1916
Expression_system: Streptomyces Lividans
Expression_system_taxid: 1916
Expression_system_strain: Iaf 19
symmetry Space Group: P 21 21 21
R_factor 0.103 R_Free 0.124
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.328 46.132 86.382 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand EDO, IMD, XIF, XYP enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1E0W, 1V0M
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic resolution analyses of the binding of xylobiose-derived deoxynojirimycin and isofagomine to xylanase Xyn10A., Gloster TM, Williams SJ, Roberts S, Tarling CA, Wicki J, Withers SG, Davies GJ, Chem Commun (Camb). 2004 Aug 21;(16):1794-5. Epub 2004 Jul 23. PMID:15306887
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (1v0n.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 1V0N
  • CSU: Contacts of Structural Units for 1V0N
  • Likely Quarternary Molecular Structure file(s) for 1V0N
  • Structure Factors (1362 Kb)
  • Retrieve 1V0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V0N from S2C, [Save to disk]
  • Re-refined 1v0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V0N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1V0N from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V0N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v0na_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v0n] [1v0n_A]
  • SWISS-PROT database: [P26514]
  • Domain organization of [XYNA_STRLI] by SWISSPFAM
  • Domain found in 1V0N: [Glyco_10 ] by SMART
  • Other resources with information on 1V0N
  • Community annotation for 1V0N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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