1V0W	Hydrolase	date	Apr 02, 2004
title	Phospholipase D From Streptomyces Sp. Strain Pmf Soaked With Substrate Dibutyrylphosphatidylcholine.
authors	I.Leiros, S.Mcsweeney, E.Hough
compound		source
Molecule: Phospholipase D Chain: A Ec: 3.1.4.4		Organism_scientific: Streptomyces Sp. Organism_taxid: 172564 Strain: Pmf
symmetry	Space Group: P 1 21 1	R_factor 0.161 R_Free 0.186
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.227 56.370 68.631 90.00 93.69 90.00
method	X-Ray Diffraction	resolution	1.35 Å
ligand	PO3	enzyme	Hydrolase E.C.3.1.4.4 BRENDA
related structures	by homologous chain: 1F0I
Gene Ontology	Chain Function Process Component A
Primary reference	The reaction mechanism of phospholipase D from Streptomyces sp. strain PMF. Snapshots along the reaction pathway reveal a pentacoordinate reaction intermediate and an unexpected final product., Leiros I, McSweeney S, Hough E, J Mol Biol 2004 Jun 11;339(4):805-20. PMID:15165852

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (1v0w.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 1V0W CSU: Contacts of Structural Units for 1V0W Likely Quarternary Molecular Structure file(s) for 1V0W Structure Factors (654 Kb) Retrieve 1V0W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V0W from S2C, [Save to disk] Re-refined 1v0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V0W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V0W

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1V0W from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V0W, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v0wa2, region A:264-514 [Jmol] [rasmolscript] [script source]     - Domain d1v0wa1, region A:6-263 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v0w_A] [1v0w] SWISS-PROT database: [P84147] Domain organization of [P84147_STRSM] by SWISSPFAM Domain found in 1V0W: [PLDc ] by SMART

Other resources with information on 1V0W

Community annotation for 1V0W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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