1V1I Adenovirus date Apr 16, 2004
title Adenovirus Fibre Shaft Sequence N-Terminally Fused To The Bacteriophage T4 Fibritin Foldon Trimerisation Motif With A Linker
authors K.Papanikolopoulou, S.Teixeira, H.Belrhali, V.T.Forsyth, A.Mitra M.J.Van Raaij
compound source
Molecule: Fibritin, Fiber Protein
Chain: A, B, C
Fragment: Shaft Domain Plus Foldon Domain, Residues 319-392 483;
Synonym: Artifical Fusion Of Adenovirus Fibre Shaft With Bacteriophage T4 Fibritin Foldon, Whisker Antigen Control P Collar Protein;
Engineered: Yes
Other_details: Artificial Fusion Protein Of Adenovirus Type Shaft Residues 319-398 - Bacteriophage T4 Fibritin Foldon R 457-483 With A Gly-Ser Linker In Between
Organism_scientific: Human Adenovirus C, Enterobacteria Pha
Organism_taxid: 129951, 10665
Atcc: Vr-846 And 11303-B4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109(De3)
Expression_system_plasmid: Pt7.7
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.230 43.270 100.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
related structures by homologous chain: 1AA0, 1OX3, 1QIU, 1V1H
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAdenovirus fibre shaft sequences fold into the native triple beta-spiral fold when N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif., Papanikolopoulou K, Teixeira S, Belrhali H, Forsyth VT, Mitraki A, van Raaij MJ, J Mol Biol. 2004 Sep 3;342(1):219-27. PMID:15313619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1v1i.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1V1I
  • Likely Quarternary Molecular Structure file(s) for 1V1I
  • Structure Factors (176 Kb)
  • Retrieve 1V1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V1I from S2C, [Save to disk]
  • Re-refined 1v1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V1I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V1I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v1ia1, region A:319-393 [Jmol] [rasmolscript] [script source]
        - Domain d1v1ia2, region A:457-483 [Jmol] [rasmolscript] [script source]
        - Domain d1v1ib1, region B:319-392 [Jmol] [rasmolscript] [script source]
        - Domain d1v1ib2, region B:458-483 [Jmol] [rasmolscript] [script source]
        - Domain d1v1ic1, region C:319-391 [Jmol] [rasmolscript] [script source]
        - Domain d1v1ic2, region C:459-483 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v1i_C] [1v1i] [1v1i_A] [1v1i_B]
  • SWISS-PROT database: [P03275] [P10104]
  • Domain organization of [FIBP_ADE02] [WAC_BPT4] by SWISSPFAM
  • Other resources with information on 1V1I
  • Community annotation for 1V1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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