1V1P Virulence Factor date Apr 21, 2004
title The Structure Ssl From Staphylococcus Aureus From An Orthorh Crystal Form
authors D.C.Briggs, C.E.Naylor
compound source
Molecule: Exotoxin 1
Chain: A
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Set1, Ers072840_02173, Nctc7878_00468
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Jm109(Prep4)
Expression_system_plasmid: Pqe30

Molecule: Exotoxin 1
Chain: B
Engineered: Yes

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Set1, Ers072840_02173, Nctc7878_00468
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Jm109(Prep4)
Expression_system_plasmid: Pqe30
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.653 71.598 103.471 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1V1O
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural relationships and cellular tropism of staphylococcal superantigen-like proteins., Al-Shangiti AM, Naylor CE, Nair SP, Briggs DC, Henderson B, Chain BM, Infect Immun. 2004 Jul;72(7):4261-70. PMID:15213171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1v1p.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 1V1P
  • Likely Quarternary Molecular Structure file(s) for 1V1P
  • Structure Factors (87 Kb)
  • Retrieve 1V1P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V1P from S2C, [Save to disk]
  • Re-refined 1v1p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V1P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V1P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V1P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v1pa2, region A:109-211 [Jmol] [rasmolscript] [script source]
        - Domain d1v1pa1, region A:21-108 [Jmol] [rasmolscript] [script source]
        - Domain d1v1pb2, region B:109-213 [Jmol] [rasmolscript] [script source]
        - Domain d1v1pb1, region B:23-108 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v1p_B] [1v1p_A] [1v1p]
  • SWISS-PROT database: [Q9ZFS5]
  • Domain organization of [Q9ZFS5_STAAU] by SWISSPFAM
  • Other resources with information on 1V1P
  • Community annotation for 1V1P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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