1V3W Transferase date Nov 07, 2003
title Structure Of Ferripyochelin Binding Protein From Pyrococcus Ot3
authors J.Jeyakanthan, T.H.Tahirov, Riken Structural Genomicsproteomi Initiative (Rsgi)
compound source
Molecule: Ferripyochelin Binding Protein
Chain: A
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codon Plus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: F 41 3 2
R_factor 0.185 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.156 156.156 156.156 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA, CL, EDO, GOL, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
related structures by homologous chain: 1V67
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceObservation of a calcium-binding site in the gamma-class carbonic anhydrase from Pyrococcus horikoshii., Jeyakanthan J, Rangarajan S, Mridula P, Kanaujia SP, Shiro Y, Kuramitsu S, Yokoyama S, Sekar K, Acta Crystallogr D Biol Crystallogr. 2008 Oct;64(Pt 10):1012-9. Epub 2008, Sep 19. PMID:18931408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1v3w.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 1V3W
  • CSU: Contacts of Structural Units for 1V3W
  • Likely Quarternary Molecular Structure file(s) for 1V3W
  • Structure Factors (431 Kb)
  • Retrieve 1V3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V3W from S2C, [Save to disk]
  • Re-refined 1v3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V3W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1V3W from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V3W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v3wa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v3w_A] [1v3w]
  • SWISS-PROT database: [O59257]
  • Domain organization of [O59257_PYRHO] by SWISSPFAM
  • Other resources with information on 1V3W
  • Community annotation for 1V3W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science