1V3X Hydrolase date Nov 07, 2003
title Factor Xa In Complex With The Inhibitor 1-[6-Methyl-4,5,6,7- Tetrahydrothiazolo(5,4-C)Pyridin-2-Yl] Carbonyl-2-Carbamoyl Chloronaphth-2-Ylsulphonyl)Piperazine
authors M.Suzuki
compound source
Molecule: Coagulation Factor X, Heavy Chain
Chain: A
Fragment: Residues 16-243
Synonym: Factor Xa Heavy Chain, Activated Factor Xa Heavy C
Ec: 3.4.21.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Coagulation Factor X, Light Chain
Chain: B
Fragment: Residues 87-138
Synonym: Factor Xa Light Chain
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Proteolytic Cleavage Product
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.050 71.927 78.799 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, D76 enzyme Hydrolase E.C.3.4.21.6 BRENDA
related structures by homologous chain: 1EZQ, 1LPK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis and conformational analysis of a non-amidine factor Xa inhibitor that incorporates 5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridine as S4 binding element., Haginoya N, Kobayashi S, Komoriya S, Yoshino T, Suzuki M, Shimada T, Watanabe K, Hirokawa Y, Furugori T, Nagahara T, J Med Chem 2004 Oct 7;47(21):5167-82. PMID:15456260
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1v3x.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1V3X
  • CSU: Contacts of Structural Units for 1V3X
  • Likely Quarternary Molecular Structure file(s) for 1V3X
  • Retrieve 1V3X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V3X from S2C, [Save to disk]
  • View 1V3X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V3X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V3X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v3xa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1v3xb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v3x] [1v3x_B] [1v3x_A]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 1V3X: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 1V3X
  • Community annotation for 1V3X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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