1V7Z Hydrolase date Dec 26, 2003
title Creatininase-Product Complex
authors T.Yoshimoto, N.Tanaka, N.Kanada, T.Inoue, Y.Nakajima, M.Haratake, K.T.Nakamura, Y.Xu, K.Ito
compound source
Molecule: Creatinine Amidohydrolase
Chain: A, B, C, D, E, F
Synonym: Creatininase
Ec: 3.5.2.10
Engineered: Yes
 Organism_scientific: Pseudomonas Sp.
Organism_taxid: 306
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.186 152.211 167.119 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CRN, MN, SO4, ZN enzyme Hydrolase E.C.3.5.2.10 BRENDA
related structures by homologous chain: 1J2T
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism., Yoshimoto T, Tanaka N, Kanada N, Inoue T, Nakajima Y, Haratake M, Nakamura KT, Xu Y, Ito K, J Mol Biol 2004 Mar 19;337(2):399-416. PMID:15003455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (1v7z.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 1V7Z
  • CSU: Contacts of Structural Units for 1V7Z
  • Likely Quarternary Molecular Structure file(s) for 1V7Z
  • Retrieve 1V7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V7Z from S2C, [Save to disk]
    • View 1V7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V7Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V7Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v7za_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1v7zb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1v7zc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1v7zd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1v7ze_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1v7zf_, region F [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v7z_A] [1v7z_B] [1v7z_C] [1v7z_D] [1v7z_F] [1v7z_E] [1v7z]
  • SWISS-PROT database: [Q52548]
  • Domain organization of [Q52548_9PSED] by SWISSPFAM
    • Other resources with information on 1V7Z
  • Community annotation for 1V7Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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