1V86 Structural Genomics, Unknown Function date Dec 29, 2003
title Solution Structure Of The Ubiquitin Domain From Mouse D7wsu1 Protein
authors T.Tomizawa, T.Kigawa, S.Koshiba, M.Inoue, S.Yokoyama, Riken Struc Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Dna Segment, Chr 7, Wayne State University 128, E
Chain: A
Fragment: Ubiquitin Domain
Synonym: D7wsu128e Protein
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 5730563g13
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030414-68
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (457 Kb) [Save to disk]
  • Biological Unit Coordinates (1v86.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1V86
  • Original NMR restraints for 1V86 from PDB
  • Retrieve 1V86 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V86 from S2C, [Save to disk]
    • View 1V86 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V86
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V86, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v86a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v86] [1v86_A]
  • SWISS-PROT database: [Q9CYA9] [Q78JW9]
  • Domain organization of [Q9CYA9_MOUSE] [UBFD1_MOUSE] by SWISSPFAM
  • Domain found in 1V86: [UBQ ] by SMART
    • Other resources with information on 1V86
  • Community annotation for 1V86 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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