1V8F	Ligase	date	Jan 08, 2004
title	Crystal Structure Of Pantoate-Beta-Alanine (Pantothenate Syn From Thermus Thermophilus Hb8
authors	B.Bagautdinov, T.H.Tahirov, Riken Structural Genomicsproteomi Initiative (Rsgi)
compound		source
Molecule: Pantoate-Beta-Alanine Ligase Chain: A, B Synonym: Pantothenate Synthetase Ec: 6.3.2.1 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Gene: Panc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 61 2 2	R_factor 0.205 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.514 88.514 266.720 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	144, CL, GOL, P6G	enzyme	Ligase E.C.6.3.2.1 BRENDA
related structures	by homologous chain: 1UFV
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (1v8f.pdb1.gz) 103 Kb Biological Unit Coordinates (1v8f.pdb2.gz) 203 Kb LPC: Ligand-Protein Contacts for 1V8F CSU: Contacts of Structural Units for 1V8F Likely Quarternary Molecular Structure file(s) for 1V8F Structure Factors (707 Kb) Retrieve 1V8F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V8F from S2C, [Save to disk] Re-refined 1v8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V8F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V8F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V8F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v8fa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1v8fb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v8f_B] [1v8f] [1v8f_A] SWISS-PROT database: [Q5SHF5] Domain organization of [PANC_THET8] by SWISSPFAM

Other resources with information on 1V8F

Community annotation for 1V8F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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