1V8Q Translation date Jan 13, 2004
title Crystal Structure Of Ribosomal Protein L27 From Thermus Ther Hb8
authors H.Wang, C.Takemoto-Hori, K.Murayama, T.Terada, M.Shirouzu, S.Kura S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Tt0826
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-26
symmetry Space Group: P 43
R_factor 0.197 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.543 48.543 139.120 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand DTT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of ribosomal protein L27 from Thermus thermophilus HB8., Wang H, Takemoto CH, Murayama K, Sakai H, Tatsuguchi A, Terada T, Shirouzu M, Kuramitsu S, Yokoyama S, Protein Sci 2004 Oct;13(10):2806-10. Epub 2004 Aug 31. PMID:15340170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1v8q.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1V8Q
  • CSU: Contacts of Structural Units for 1V8Q
  • Likely Quarternary Molecular Structure file(s) for 1V8Q
  • Structure Factors (61 Kb)
  • Retrieve 1V8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V8Q from S2C, [Save to disk]
  • Re-refined 1v8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1V8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V8Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V8Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v8qa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1v8qb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1v8qc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1v8qd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v8q_B] [1v8q_C] [1v8q_D] [1v8q_A] [1v8q]
  • SWISS-PROT database: [P60493]
  • Domain organization of [RL27_THET8] by SWISSPFAM
    • Other resources with information on 1V8Q
  • Community annotation for 1V8Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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