1V9J Structural Genomics, Unknown Function date Jan 26, 2004
title Solution Structure Of A Bola-Like Protein From Mus Musculus
authors T.Kasai, M.Inoue, S.Koshiba, T.Yabuki, M.Aoki, E.Nunokawa, E.Seki, T.Matsuda, N.Matsuda, Y.Tomo, M.Shirouzu, T.Terada, N.Obayashi, H N.Shinya, A.Tatsuguchi, S.Yasuda, M.Yoshida, H.Hirota, Y.Matsuo, H.Suzuki, T.Arakawa, P.Carninci, J.Kawai, Y.Hayashizaki, T.Kigaw S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Bola-Like Protein Riken Cdna 1110025l05
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P011101-17
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 1V9J supersedes 1IW5
related structures by homologous chain: 1UH6, 1XPN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of a BolA-like protein from Mus musculus., Kasai T, Inoue M, Koshiba S, Yabuki T, Aoki M, Nunokawa E, Seki E, Matsuda T, Matsuda N, Tomo Y, Shirouzu M, Terada T, Obayashi N, Hamana H, Shinya N, Tatsuguchi A, Yasuda S, Yoshida M, Hirota H, Matsuo Y, Tani K, Suzuki H, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Kigawa T, Yokoyama S, Protein Sci 2004 Feb;13(2):545-8. Epub 2004 Jan 10. PMID:14718656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (590 Kb) [Save to disk]
  • Biological Unit Coordinates (1v9j.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1V9J
  • Original NMR restraints for 1V9J from PDB
  • Retrieve 1V9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V9J from S2C, [Save to disk]
    • View 1V9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V9J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V9J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v9ja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v9j] [1v9j_A]
  • SWISS-PROT database: [Q8BGS2]
  • Domain organization of [BOLA2_MOUSE] by SWISSPFAM
    • Other resources with information on 1V9J
  • Community annotation for 1V9J at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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