1VA8 Membrane Protein date Feb 13, 2004
title Solution Structure Of The Pdz Domain Of Pals1 Protein
authors X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsprot Initiative (Rsgi)
compound source
Molecule: Maguk P55 Subfamily Member 5
Chain: A
Fragment: Pdz Domain
Synonym: Pals1 Protein, Protein Associated With Lin-7 1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 3830420b02
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030203-38
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (544 Kb) [Save to disk]
  • Biological Unit Coordinates (1va8.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1VA8
  • Original NMR restraints for 1VA8 from PDB
  • Retrieve 1VA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VA8 from S2C, [Save to disk]
    • View 1VA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VA8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VA8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1va8_A] [1va8]
  • SWISS-PROT database: [Q9JLB2]
  • Domain organization of [MPP5_MOUSE] by SWISSPFAM
  • Domain found in 1VA8: [PDZ ] by SMART
    • Other resources with information on 1VA8
  • Community annotation for 1VA8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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