1VAG Oxidoreductase date Feb 16, 2004
title Neuronal Nitric Oxide Synthase Oxygenase Domain Complexed Wi Inhibitor Ar-R17477
authors R.Fedorov, R.Vasan, D.K.Ghosh, I.Schlichting
compound source
Molecule: Nitric-Oxide Synthase, Brain
Chain: A
Fragment: Neuronal Oxide Synthase Oxygenase Domain (Residue 716);
Synonym: Nos, Type I, Neuronal Nos, N-Nos, Nnos, Constituti Nc-Nos, Bnos;
Ec: 1.14.13.39
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Nos1, Bnos
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcwori
symmetry Space Group: C 2 2 21
R_factor 0.193 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.269 109.199 164.885 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ARR, H4B, HEM, ZN BindingDB enzyme Oxidoreductase E.C.1.14.13.39 BRENDA
related structures by homologous chain: 1D1W, 1P6H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of nitric oxide synthase isoforms complexed with the inhibitor AR-R17477 suggest a rational basis for specificity and inhibitor design., Fedorov R, Vasan R, Ghosh DK, Schlichting I, Proc Natl Acad Sci U S A 2004 Apr 20;101(16):5892-7. Epub 2004 Apr 7. PMID:15071192
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1vag.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 1VAG
  • CSU: Contacts of Structural Units for 1VAG
  • Likely Quarternary Molecular Structure file(s) for 1VAG
  • Structure Factors (249 Kb)
  • Retrieve 1VAG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VAG from S2C, [Save to disk]
  • Re-refined 1vag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VAG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VAG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VAG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vaga_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vag] [1vag_A]
  • SWISS-PROT database: [P29476]
  • Domain organization of [NOS1_RAT] by SWISSPFAM
  • Other resources with information on 1VAG
  • Community annotation for 1VAG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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