1VB7 Structural Genomics, Unknown Function date Feb 24, 2004
title Solution Structure Of The Pdz Domain Of Pdz And Lim Domain 2
authors R.Hatta, F.Hayashi, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Pdz And Lim Domain 2
Chain: A
Fragment: Pdz Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Cdna 2310041e13
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030203-89
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • Biological Unit Coordinates (1vb7.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1VB7
  • Retrieve 1VB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VB7 from S2C, [Save to disk]
    • View 1VB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VB7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VB7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vb7a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vb7] [1vb7_A]
  • SWISS-PROT database: [Q8R1G6]
  • Domain organization of [PDLI2_MOUSE] by SWISSPFAM
  • Domain found in 1VB7: [PDZ ] by SMART
    • Other resources with information on 1VB7
  • Community annotation for 1VB7 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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