1VDD	Recombination	date	Mar 20, 2004
title	Crystal Structure Of Recombinational Repair Protein Recr
authors	B.I.Lee, K.H.Kim, S.W.Suh
compound		source
Molecule: Recombination Protein Recr Chain: A, B, C, D Fragment: Residues 1-199 Engineered: Yes		Organism_scientific: Deinococcus Radiodurans Organism_taxid: 1299 Gene: Recr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: C 2 2 21	R_factor 0.233 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.218 121.386 154.993 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	IMD, ZN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair., Lee BI, Kim KH, Park SJ, Eom SH, Song HK, Suh SW, EMBO J 2004 May 19;23(10):2029-38. Epub 2004 Apr 29. PMID:15116069

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk] Biological Unit Coordinates (1vdd.pdb1.gz) 122 Kb Biological Unit Coordinates (1vdd.pdb2.gz) 241 Kb LPC: Ligand-Protein Contacts for 1VDD CSU: Contacts of Structural Units for 1VDD Likely Quarternary Molecular Structure file(s) for 1VDD Structure Factors (465 Kb) Retrieve 1VDD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VDD from S2C, [Save to disk] Re-refined 1vdd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VDD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VDD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VDD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vdda_, region A [Jmol] [rasmolscript] [script source]     - Domain d1vddb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1vddc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1vddd_, region D [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vdd_C] [1vdd_B] [1vdd_A] [1vdd_D] [1vdd] SWISS-PROT database: [Q9ZNA2] Domain organization of [RECR_DEIRA] by SWISSPFAM Domains found in 1VDD: [HhH1] [TOPRIM ] by SMART

Other resources with information on 1VDD

Community annotation for 1VDD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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