1VDY Structural Genomics, Unknown Function date Mar 25, 2004
title Nmr Structure Of The Hypothetical Enth-Vhs Domain At3g16270 Arabidopsis Thaliana
authors B.Lopez-Mendez, D.Pantoja-Uceda, T.Tomizawa, S.Koshiba, T.Kigawa M.Shirouzu, T.Terada, M.Inoue, T.Yabuki, M.Aoki, E.Seki, T.Matsud H.Hirota, M.Yoshida, A.Tanaka, T.Osanai, M.Seki, K.Shinozaki, S.Y P.Guntert, Riken Structural Genomicsproteomics Initiative (
compound source
Molecule: Hypothetical Protein (Rafl09-17-B18)
Chain: A
Fragment: Enth-Vhs Hypothetical Domain
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Riken Cdna Rafl09-17-B18
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P021216-68
Other_details: E.Coli Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (708 Kb) [Save to disk]
  • Biological Unit Coordinates (1vdy.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1VDY
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1VDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VDY from S2C, [Save to disk]
  • View 1VDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VDY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VDY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vdy_A] [1vdy]
  • SWISS-PROT database: [Q9C5H4]
  • Domain organization of [Y3627_ARATH] by SWISSPFAM
  • Domain found in 1VDY: [VHS ] by SMART
  • Other resources with information on 1VDY
  • Community annotation for 1VDY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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