1VE9	Oxidoreductase	date	Mar 29, 2004
title	Porcine Kidney D-Amino Acid Oxidase
authors	H.Mizutani, I.Miyahara, K.Hirotsu, Y.Nishina, K.Shiga, C.Setoyama
compound		source
Molecule: D-Amino Acid Oxidase Chain: A, B Synonym: Damox, Dao, Daao Ec: 1.4.3.3 Engineered: Yes		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Tissue: Kidney Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11d
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.300 92.900 71.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	BEZ, FAD	enzyme	Oxidoreductase E.C.1.4.3.3 BRENDA
note	1VE9 supersedes 1AA8
related structures	by homologous chain: 1AN9
Gene Ontology	Chain Function Process Component A, B
Primary reference	Three-dimensional structure of porcine kidney D-amino acid oxidase at 3.0 A resolution., Mizutani H, Miyahara I, Hirotsu K, Nishina Y, Shiga K, Setoyama C, Miura R, J Biochem (Tokyo) 1996 Jul;120(1):14-7. PMID:8864836

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk] Biological Unit Coordinates (1ve9.pdb1.gz) 114 Kb LPC: Ligand-Protein Contacts for 1VE9 CSU: Contacts of Structural Units for 1VE9 Likely Quarternary Molecular Structure file(s) for 1VE9 Structure Factors (172 Kb) Retrieve 1VE9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VE9 from S2C, [Save to disk] Re-refined 1ve9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VE9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VE9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VE9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ve9a1, region A:1-194,A:288-340 [Jmol] [rasmolscript] [script source]     - Domain d1ve9a2, region A:195-287 [Jmol] [rasmolscript] [script source]     - Domain d1ve9b1, region B:1-194,B:288-340 [Jmol] [rasmolscript] [script source]     - Domain d1ve9b2, region B:195-287 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ve9] [1ve9_B] [1ve9_A] SWISS-PROT database: [P00371] Domain organization of [OXDA_PIG] by SWISSPFAM

Other resources with information on 1VE9

Community annotation for 1VE9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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