1VEE Structural Genomics, Unknown Function date Mar 30, 2004
title Nmr Structure Of The Hypothetical Rhodanese Domain At4g01050 Arabidopsis Thaliana
authors D.Pantoja-Uceda, B.Lopez-Mendez, S.Koshiba, M.Inoue, T.Kigawa, T. M.Shirouzu, A.Tanaka, M.Seki, K.Shinozaki, S.Yokoyama, P.Guntert Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Proline-Rich Protein Family
Chain: A
Fragment: Rhodanese Hypothetical Domain
Synonym: Hypothetical Protein Rafl06-68-J04
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Riken Cdna Rafl06-68-J04
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030120-27
Other_details: E.Coli Cell-Free Protein Synthesis
methodSolution NMR
Primary referenceSolution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana., Pantoja-Uceda D, Lopez-Mendez B, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S, Guntert P, Protein Sci 2005 Jan;14(1):224-30. Epub 2004 Dec 02. PMID:15576557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (646 Kb) [Save to disk]
  • Biological Unit Coordinates (1vee.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1VEE
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1VEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VEE from S2C, [Save to disk]
    • View 1VEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VEE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VEE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vee] [1vee_A]
  • SWISS-PROT database: [Q9M158]
  • Domain organization of [Y4105_ARATH] by SWISSPFAM
    • Other resources with information on 1VEE
  • Community annotation for 1VEE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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