1VFC Structural Protein Dna date Apr 12, 2004
title Solution Structure Of The Dna Complex Of Human Trf2
authors Y.Nishimura, S.Hanaoka
compound source
Molecule: Short G-Rich Strand
Chain: B
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.

Molecule: Short C-Rich Starnd
Chain: C
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.

Molecule: Telomeric Repeat Binding Factor 2
Chain: A
Fragment: Dna Binding Domain
Synonym: Trf2, Ttaggg Repeat Binding Factor 2, Telomeric Dn Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23b
methodSolution NMR
related structures by homologous chain: 1VF9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities., Hanaoka S, Nagadoi A, Nishimura Y, Protein Sci 2005 Jan;14(1):119-30. PMID:15608118
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (588 Kb) [Save to disk]
  • Biological Unit Coordinates (1vfc.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1VFC
  • Original NMR restraints for 1VFC from PDB
  • Retrieve 1VFC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VFC from S2C, [Save to disk]
    • View 1VFC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VFC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VFC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vfc_B] [1vfc] [1vfc_A] [1vfc_C]
  • SWISS-PROT database: [Q15554]
  • Domain organization of [TERF2_HUMAN] by SWISSPFAM
  • Domain found in 1VFC: [SANT ] by SMART
    • Other resources with information on 1VFC
  • Community annotation for 1VFC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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